| Package | Description |
|---|---|
| com.milaboratory.core.alignment |
| Modifier and Type | Method and Description |
|---|---|
static <S extends Sequence<S>> |
AlignerCustom.alignLinearSemiLocalLeft0(LinearGapAlignmentScoring<S> scoring,
S seq1,
S seq2,
int offset1,
int length1,
int offset2,
int length2,
boolean boundSeq1,
boolean boundSeq2,
Alphabet<S> alphabet,
AlignerCustom.LinearMatrixCache cache)
Align two sequences from left to right; left edges of both sequences considered to be already aligned.
|
static <S extends Sequence<S>> |
AlignerCustom.alignLinearSemiLocalRight0(LinearGapAlignmentScoring<S> scoring,
S seq1,
S seq2,
int offset1,
int length1,
int offset2,
int length2,
boolean boundSeq1,
boolean boundSeq2,
Alphabet<S> alphabet,
AlignerCustom.LinearMatrixCache cache) |
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