Uses of Class
com.milaboratory.core.alignment.BandedAlignerParameters

Packages that use BandedAlignerParameters

Package	Description
com.milaboratory.core.alignment

Uses of BandedAlignerParameters in com.milaboratory.core.alignment

Methods in com.milaboratory.core.alignment that return BandedAlignerParameters

Modifier and Type	Method and Description
BandedAlignerParameters<S>	BandedAlignerParameters.clone()
BandedAlignerParameters	BandedAlignerParameters.setScoring(AlignmentScoring<S> scoring) Sets scoring used for alignment.
BandedAlignerParameters	BandedAlignerParameters.setStopPenalty(int stopPenalty) Sets alignment score value in banded alignment matrix at which alignment terminates.
BandedAlignerParameters	BandedAlignerParameters.setWidth(int width) Sets width of banded alignment matrix.