Uses of Class
com.milaboratory.core.alignment.MultiAlignmentHelper

Packages that use MultiAlignmentHelper

Package	Description
com.milaboratory.core.alignment

Uses of MultiAlignmentHelper in com.milaboratory.core.alignment

Methods in com.milaboratory.core.alignment that return MultiAlignmentHelper

Modifier and Type	Method and Description
MultiAlignmentHelper	MultiAlignmentHelper.addAnnotationString(String title, String string)
MultiAlignmentHelper	MultiAlignmentHelper.addSubjectQuality(String title, SequenceQuality quality)
static <S extends Sequence<S>> MultiAlignmentHelper	MultiAlignmentHelper.build(MultiAlignmentHelper.Settings settings, Range subjectRange, Alignment<S>... alignments)
static <S extends Sequence<S>> MultiAlignmentHelper	MultiAlignmentHelper.build(MultiAlignmentHelper.Settings settings, Range subjectRange, S subject, Alignment<S>... alignments)
MultiAlignmentHelper	MultiAlignmentHelper.getRange(int from, int to)
MultiAlignmentHelper	MultiAlignmentHelper.setQueryLeftTitle(int id, String queryLeftTitle)
MultiAlignmentHelper	MultiAlignmentHelper.setQueryRightTitle(int id, String queryRightTitle)
MultiAlignmentHelper	MultiAlignmentHelper.setSubjectLeftTitle(String subjectLeftTitle)
MultiAlignmentHelper	MultiAlignmentHelper.setSubjectRightTitle(String subjectRightTitle)
MultiAlignmentHelper[]	MultiAlignmentHelper.split(int length)
MultiAlignmentHelper[]	MultiAlignmentHelper.split(int length, boolean eqPositionWidth)

Methods in com.milaboratory.core.alignment with parameters of type MultiAlignmentHelper

Modifier and Type	Method and Description
static void	MultiAlignmentHelper.alignPositions(MultiAlignmentHelper[] helpers)