com.milaboratory.core.alignment.kaligner1

Interface AbstractKAlignerParameters

All Superinterfaces:

BatchAlignerWithBaseParameters

All Known Implementing Classes:

KAlignerParameters, KAlignerParameters2

public interface AbstractKAlignerParameters
extends BatchAlignerWithBaseParameters

Author:

Stanislav Poslavsky

Method Summary

Methods

Modifier and Type	Method and Description
AbstractKAlignerParameters	clone()
int	getMaxHits()
float	getRelativeMinScore()
boolean	isFloatingLeftBound()
boolean	isFloatingRightBound()

Methods inherited from interface com.milaboratory.core.alignment.batch.BatchAlignerWithBaseParameters

createAligner, getScoring

Method Detail

isFloatingLeftBound

boolean isFloatingLeftBound()

isFloatingRightBound

boolean isFloatingRightBound()

getRelativeMinScore

float getRelativeMinScore()

getMaxHits

int getMaxHits()

clone

AbstractKAlignerParameters clone()

Specified by:

clone in interface BatchAlignerWithBaseParameters