com.milaboratory.core.alignment.kaligner1

Class KAlignmentResultP<P,Q>

java.lang.Object

com.milaboratory.core.alignment.kaligner1.KAlignmentResult<P>

com.milaboratory.core.alignment.kaligner1.KAlignmentResultP<P,Q>

All Implemented Interfaces:

AlignmentResult<KAlignmentHit<P>>, PipedAlignmentResult<KAlignmentHit<P>,Q>, Serializable, Iterable<KAlignmentHit<P>>

public final class KAlignmentResultP<P,Q>
extends KAlignmentResult<P>
implements PipedAlignmentResult<KAlignmentHit<P>,Q>

Piped version of KAlignmentResult.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
KAlignmentResultP(Q query, KAligner<P> aligner, KMappingResult mappingResult, NucleotideSequence target, int targetFrom, int targetTo)

Method Summary

Methods

Modifier and Type	Method and Description
Q	getQuery()

Methods inherited from class com.milaboratory.core.alignment.kaligner1.KAlignmentResult

calculateAllAlignments, getAligner, getBestHit, getHits, getMappingResult, getTarget, getTargetFrom, getTargetTo, hasHits, iterator, refresh, sortAccordingToMapperScores

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.milaboratory.core.alignment.batch.AlignmentResult

getBestHit, getHits, hasHits

Constructor Detail

KAlignmentResultP

public KAlignmentResultP(Q query,
                 KAligner<P> aligner,
                 KMappingResult mappingResult,
                 NucleotideSequence target,
                 int targetFrom,
                 int targetTo)

Method Detail

getQuery

public Q getQuery()

Specified by:

getQuery in interface PipedAlignmentResult<KAlignmentHit<P>,Q>