com.milaboratory.core.alignment.kaligner1

Class KMappingHit

java.lang.Object

com.milaboratory.core.alignment.kaligner1.KMappingHit

All Implemented Interfaces:

Serializable

public final class KMappingHit
extends Object
implements Serializable

KMappingHit - class which represents single hit for KMappingResult

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
KMappingHit(int offset, int id, float score, int from, int to) Creates new KMappingHit

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o)
int	getFrom()
int	getTo()
int	hashCode()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

KMappingHit

public KMappingHit(int offset,
           int id,
           float score,
           int from,
           int to)

Creates new KMappingHit

Parameters:

offset - best offset value (most popular offset)

id - reference id (in KMapper storage)

score - absolute alignment score value

from - index of seed in seeds array of KMappingResult from which intersection range of target and reference sequences starts

to - index of seed in seeds array of KMappingResult from which intersection range of target and reference sequences ends

Method Detail

getFrom

public int getFrom()

getTo

public int getTo()

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object