| Package | Description |
|---|---|
| com.milaboratory.core.alignment.kaligner1 |
| Modifier and Type | Method and Description |
|---|---|
KAlignmentHit |
KAlignmentResult.getBestHit()
Returns best hit (hit with highest alignment or mapper (if lazy alignment is used) score) or null if there is no
hits in this result
|
| Modifier and Type | Method and Description |
|---|---|
AlignmentResult<KAlignmentHit<P>> |
KAligner.align(NucleotideSequence sequence,
int from,
int to,
BitArray filter) |
List<KAlignmentHit<P>> |
KAlignmentResult.getHits()
Returns list of hits found in target sequence
|
Iterator<KAlignmentHit<P>> |
KAlignmentResult.iterator() |
| Modifier and Type | Method and Description |
|---|---|
static void |
KAlignmentHit.printHitAlignment(KAlignmentHit hit) |
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