Uses of Class
com.milaboratory.core.alignment.kaligner1.KAlignmentResult

Packages that use KAlignmentResult

Package	Description
com.milaboratory.core.alignment.kaligner1

Uses of KAlignmentResult in com.milaboratory.core.alignment.kaligner1

Subclasses of KAlignmentResult in com.milaboratory.core.alignment.kaligner1

Modifier and Type	Class and Description
class	KAlignmentResultP<P,Q> Piped version of KAlignmentResult.

Methods in com.milaboratory.core.alignment.kaligner1 that return KAlignmentResult

Modifier and Type	Method and Description
KAlignmentResult<P>	KAligner.align(NucleotideSequence sequence) Performs a comprehensive alignment of a sequence.
KAlignmentResult<P>	KAligner.align(NucleotideSequence sequence, int from, int to) Performs a comprehensive alignment of a sequence.
KAlignmentResult<P>	KAligner.align(NucleotideSequence sequence, int from, int to, boolean restrictToRange, BitArray filter) Performs a comprehensive alignment of a sequence.
KAlignmentResult	KAlignmentHit.getResult()

Constructors in com.milaboratory.core.alignment.kaligner1 with parameters of type KAlignmentResult

Constructor and Description
KAlignmentHit(KAlignmentResult<P> result, int index) Creates new KAlignmentHit