Uses of Class
com.milaboratory.core.alignment.kaligner1.KMappingResult

Packages that use KMappingResult

Package	Description
com.milaboratory.core.alignment.kaligner1

Uses of KMappingResult in com.milaboratory.core.alignment.kaligner1

Methods in com.milaboratory.core.alignment.kaligner1 that return KMappingResult

Modifier and Type	Method and Description
KMappingResult	KMapper.align(NucleotideSequence sequence) Performs an alignment.
KMappingResult	KMapper.align(NucleotideSequence sequence, int from, int to) Performs an alignment for a part of the target sequence.
KMappingResult	KMapper.align(NucleotideSequence sequence, int from, int to, BitArray filter) Performs an alignment for a part of the target sequence.
KMappingResult	KAlignmentResult.getMappingResult() Returns mapping result

Constructors in com.milaboratory.core.alignment.kaligner1 with parameters of type KMappingResult

Constructor and Description
KAlignmentResult(KAligner<P> aligner, KMappingResult mappingResult, NucleotideSequence target, int targetFrom, int targetTo) Creates new KAlignmentResult
KAlignmentResultP(Q query, KAligner<P> aligner, KMappingResult mappingResult, NucleotideSequence target, int targetFrom, int targetTo)