Uses of Package
com.milaboratory.core.alignment.kaligner1

Packages that use com.milaboratory.core.alignment.kaligner1

Package	Description
com.milaboratory.core.alignment.kaligner1
com.milaboratory.core.alignment.kaligner2

Classes in com.milaboratory.core.alignment.kaligner1 used by com.milaboratory.core.alignment.kaligner1

Class and Description
AbstractKAlignerParameters
KAligner KAligner is a comprehensive aligner for nucleotide sequences.
KAlignerParameters
KAlignmentHit KAlignmentHit - class which represents single hit for KAlignmentResult
KAlignmentResult KAlignmentResult - class which is result of KAligner.align(com.milaboratory.core.sequence.NucleotideSequence), KAligner.align(com.milaboratory.core.sequence.NucleotideSequence, int, int), KAligner#align(com.milaboratory.core.sequence.NucleotideSequence, int, int, boolean) methods.
KAlignmentResultP Piped version of KAlignmentResult.
KMapper KMapper - class to perform fast alignment based only on matches between kMers of target and one of reference sequences.
KMappingHit KMappingHit - class which represents single hit for KMappingResult
KMappingResult KMappingResult - class which is result of KMapper#align(com.milaboratory.core.sequence.nucleotide.NucleotideSequence, int, int), KMapper.align(com.milaboratory.core.sequence.NucleotideSequence) methods.

Classes in com.milaboratory.core.alignment.kaligner1 used by com.milaboratory.core.alignment.kaligner2

Class and Description
AbstractKAlignerParameters