com.milaboratory.core.alignment.kaligner2

Class KAlignmentHit2<P>

java.lang.Object

com.milaboratory.core.alignment.kaligner2.KAlignmentHit2<P>

All Implemented Interfaces:

AlignmentHit<NucleotideSequence,P>

public final class KAlignmentHit2<P>
extends Object
implements AlignmentHit<NucleotideSequence,P>

Constructor Summary

Constructors

Constructor and Description
KAlignmentHit2(KAlignmentResult2<P> result, int indexOfMappingHit, Alignment<NucleotideSequence> alignment, P payload)

Method Summary

Methods

Modifier and Type	Method and Description
Alignment<NucleotideSequence>	getAlignment()
KMappingHit2	getMappingHit()
P	getRecordPayload()
int	getTargetId()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KAlignmentHit2

public KAlignmentHit2(KAlignmentResult2<P> result,
              int indexOfMappingHit,
              Alignment<NucleotideSequence> alignment,
              P payload)

Method Detail

getTargetId

public int getTargetId()

getMappingHit

public KMappingHit2 getMappingHit()

getAlignment

public Alignment<NucleotideSequence> getAlignment()

Specified by:

getAlignment in interface AlignmentHit<NucleotideSequence,P>

getRecordPayload

public P getRecordPayload()

Specified by:

getRecordPayload in interface AlignmentHit<NucleotideSequence,P>