com.milaboratory.core.alignment.kaligner2

Class KAlignmentResult2<P>

java.lang.Object

com.milaboratory.core.alignment.kaligner2.KAlignmentResult2<P>

All Implemented Interfaces:

AlignmentResult<KAlignmentHit2<P>>

public final class KAlignmentResult2<P>
extends Object
implements AlignmentResult<KAlignmentHit2<P>>

Created by dbolotin on 26/10/15.

Constructor Summary

Constructors

Constructor and Description
KAlignmentResult2(KMappingResult2 mappingResult, List<KAlignmentHit2<P>> hits, NucleotideSequence target, int targetFrom, int targetTo)

Method Summary

Methods

Modifier and Type	Method and Description
KAlignmentHit2<P>	getBestHit()
List<KAlignmentHit2<P>>	getHits()
boolean	hasHits()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KAlignmentResult2

public KAlignmentResult2(KMappingResult2 mappingResult,
                 List<KAlignmentHit2<P>> hits,
                 NucleotideSequence target,
                 int targetFrom,
                 int targetTo)

Method Detail

getHits

public List<KAlignmentHit2<P>> getHits()

Specified by:

getHits in interface AlignmentResult<KAlignmentHit2<P>>

getBestHit

public final KAlignmentHit2<P> getBestHit()

Specified by:

getBestHit in interface AlignmentResult<KAlignmentHit2<P>>

hasHits

public boolean hasHits()

Specified by:

hasHits in interface AlignmentResult<KAlignmentHit2<P>>