public final class OffsetPacksAccumulator extends Object
| Modifier and Type | Field and Description |
|---|---|
static int |
DROPPED_CLUSTER |
static int |
FIRST_RECORD_ID |
static int |
LAST_INDEX |
static int |
LAST_RECORD_ID |
static int |
LAST_VALUE |
static int |
MAX_VALUE |
static int |
MIN_VALUE |
static int |
OUTPUT_RECORD_SIZE |
static int |
RECORD_SIZE |
static int |
SCORE |
static int |
STRETCH_INDEX_MARK |
static int |
STRETCH_INDEX_MASK |
| Constructor and Description |
|---|
OffsetPacksAccumulator(int slotCount,
int maxAllowedDelta,
int matchScore,
int mismatchScore,
int shiftScore,
int absoluteMinClusterScore) |
| Modifier and Type | Method and Description |
|---|---|
void |
calculateInitialPartitioning(int[] data) |
void |
calculateInitialPartitioning(int[] data,
int dataFrom,
int dataTo)
Accepts array with elements in the following format:
|
void |
calculateInitialPartitioning(IntArrayList list) |
int |
numberOfClusters() |
String |
toString() |
static String |
toString(IntArrayList results,
IntArrayList seedPositions,
int[] data) |
public static final int DROPPED_CLUSTER
public static final int FIRST_RECORD_ID
public static final int LAST_RECORD_ID
public static final int SCORE
public static final int MIN_VALUE
public static final int MAX_VALUE
public static final int LAST_VALUE
public static final int LAST_INDEX
public static final int STRETCH_INDEX_MARK
public static final int STRETCH_INDEX_MASK
public static final int RECORD_SIZE
public static final int OUTPUT_RECORD_SIZE
public OffsetPacksAccumulator(int slotCount,
int maxAllowedDelta,
int matchScore,
int mismatchScore,
int shiftScore,
int absoluteMinClusterScore)
public void calculateInitialPartitioning(IntArrayList list)
public void calculateInitialPartitioning(int[] data)
public void calculateInitialPartitioning(int[] data,
int dataFrom,
int dataTo)
public int numberOfClusters()
public static String toString(IntArrayList results, IntArrayList seedPositions, int[] data)
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