Uses of Class
com.milaboratory.core.alignment.kaligner2.KAligner2Statistics

Packages that use KAligner2Statistics

Package	Description
com.milaboratory.core.alignment.benchmark
com.milaboratory.core.alignment.kaligner2

Uses of KAligner2Statistics in com.milaboratory.core.alignment.benchmark

Fields in com.milaboratory.core.alignment.benchmark declared as KAligner2Statistics

Modifier and Type	Field and Description
KAligner2Statistics	BenchmarkResults.stat

Methods in com.milaboratory.core.alignment.benchmark that return KAligner2Statistics

Modifier and Type	Method and Description
KAligner2Statistics	BenchmarkResults.getStat()

Constructors in com.milaboratory.core.alignment.benchmark with parameters of type KAligner2Statistics

Constructor and Description
BenchmarkResults(BenchmarkInput input, KAligner2Statistics stat, long executionTime, int processedQueries, int processedGoodQueries, int falsePositives, int mismatched, int noHits, int scoreError)

Uses of KAligner2Statistics in com.milaboratory.core.alignment.kaligner2

Methods in com.milaboratory.core.alignment.kaligner2 with parameters of type KAligner2Statistics

Modifier and Type	Method and Description
static KMapper2	KMapper2.createFromParameters(KAlignerParameters2 parameters, KAligner2Statistics stat) Factory method to create KMapper2 using parameters specified in the KAlignerParameters2 object.

Constructors in com.milaboratory.core.alignment.kaligner2 with parameters of type KAligner2Statistics

Constructor and Description
KAligner2(KAlignerParameters2 parameters, KAligner2Statistics stat)
KMapper2(int nValue, int kValue, int minDistance, int maxDistance, int absoluteMinClusterScore, int extraClusterScore, int absoluteMinScore, float relativeMinScore, int matchScore, int mismatchScore, int offsetShiftScore, int slotCount, int maxClusters, int maxClusterIndels, int kMersPerPosition, boolean floatingLeftBound, boolean floatingRightBound, KAligner2Statistics stat) Creates new KMer mapper.