Uses of Class
com.milaboratory.core.alignment.kaligner2.KMappingResult2

Packages that use KMappingResult2

Package	Description
com.milaboratory.core.alignment.kaligner2

Uses of KMappingResult2 in com.milaboratory.core.alignment.kaligner2

Methods in com.milaboratory.core.alignment.kaligner2 that return KMappingResult2

Modifier and Type	Method and Description
KMappingResult2	KMapper2.align(NucleotideSequence sequence) Performs an alignment.
KMappingResult2	KMapper2.align(NucleotideSequence sequence, int from, int to) Performs an alignment for a part of the target sequence.
KMappingResult2	KMapper2.align(NucleotideSequence sequence, int from, int to, BitArray filter) Performs an alignment for a part of the target sequence.

Methods in com.milaboratory.core.alignment.kaligner2 with parameters of type KMappingResult2

Modifier and Type	Method and Description
void	KAligner2Statistics.kMappingResults(KMappingResult2 result)

Constructors in com.milaboratory.core.alignment.kaligner2 with parameters of type KMappingResult2

Constructor and Description
KAlignmentResult2(KMappingResult2 mappingResult, List<KAlignmentHit2<P>> hits, NucleotideSequence target, int targetFrom, int targetTo)