com.milaboratory.core.alignment

Interfaces

• AlignerCustom.MatrixCache
• AlignmentIterator
• AlignmentScoring

Classes

• AbstractAlignmentScoring
• AffineGapAlignmentScoring
• AffineGapAlignmentScoring.SerializationObject
• Aligner
• AlignerCustom
• AlignerCustom.AffineMatrixCache
• AlignerCustom.LinearMatrixCache
• AlignerCustom.Matrix
• Alignment
• AlignmentCache
• AlignmentHelper
• AlignmentIteratorForward
• AlignmentIteratorReverse
• AlignmentTrimmer
• AlignmentUtils
• BandedAffineAligner
• BandedAffineAligner.MatrixCache
• BandedAligner
• BandedAlignerParameters
• BandedLinearAligner
• BandedMatrix
• BandedSemiLocalResult
• CachedIntArray
• LinearGapAlignmentScoring
• LinearGapAlignmentScoring.SerializationObject
• MultiAlignmentHelper
• MultiAlignmentHelper.Settings
• ScoringUtils

Enums

• BLASTMatrix