| Package | Description |
|---|---|
| com.milaboratory.core | |
| com.milaboratory.core.merger |
| Modifier and Type | Method and Description |
|---|---|
static PairedEndReadsLayout |
PairedEndReadsLayout.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static PairedEndReadsLayout[] |
PairedEndReadsLayout.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
PairedEndReadsLayout |
MergerParameters.getPartsLayout() |
| Modifier and Type | Method and Description |
|---|---|
MergerParameters |
MergerParameters.overrideReadsLayout(PairedEndReadsLayout partsLayout) |
| Constructor and Description |
|---|
MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm,
PairedEndReadsLayout partsLayout,
int minimalOverlap,
Integer maxQuality,
double minimalIdentity,
MergerParameters.IdentityType identityType) |
MismatchOnlyPairedReadMerger(int minOverlap,
double minimalIdentity,
int maxScoreValue,
QualityMergingAlgorithm qualityMergingAlgorithm,
PairedEndReadsLayout pairedEndReadsLayout)
Creates paired-end reads merger.
|
MismatchOnlyPairedReadMerger(int minOverlap,
double minimalIdentity,
MergerParameters.IdentityType identityType,
int maxScoreValue,
QualityMergingAlgorithm qualityMergingAlgorithm,
PairedEndReadsLayout pairedEndReadsLayout)
Creates paired-end reads merger.
|
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