Uses of Class
com.milaboratory.core.PairedEndReadsLayout

Packages that use PairedEndReadsLayout

Package	Description
com.milaboratory.core
com.milaboratory.core.merger

Uses of PairedEndReadsLayout in com.milaboratory.core

Methods in com.milaboratory.core that return PairedEndReadsLayout

Modifier and Type	Method and Description
static PairedEndReadsLayout	PairedEndReadsLayout.valueOf(String name) Returns the enum constant of this type with the specified name.
static PairedEndReadsLayout[]	PairedEndReadsLayout.values() Returns an array containing the constants of this enum type, in the order they are declared.

Uses of PairedEndReadsLayout in com.milaboratory.core.merger

Methods in com.milaboratory.core.merger that return PairedEndReadsLayout

Modifier and Type	Method and Description
PairedEndReadsLayout	MergerParameters.getPartsLayout()

Methods in com.milaboratory.core.merger with parameters of type PairedEndReadsLayout

Modifier and Type	Method and Description
MergerParameters	MergerParameters.overrideReadsLayout(PairedEndReadsLayout partsLayout)

Constructors in com.milaboratory.core.merger with parameters of type PairedEndReadsLayout

Constructor and Description
MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout partsLayout, int minimalOverlap, Integer maxQuality, double minimalIdentity, MergerParameters.IdentityType identityType)
MismatchOnlyPairedReadMerger(int minOverlap, double minimalIdentity, int maxScoreValue, QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout pairedEndReadsLayout) Creates paired-end reads merger.
MismatchOnlyPairedReadMerger(int minOverlap, double minimalIdentity, MergerParameters.IdentityType identityType, int maxScoreValue, QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout pairedEndReadsLayout) Creates paired-end reads merger.