Uses of Class
com.milaboratory.core.io.CompressionType

Packages that use CompressionType

Package	Description
com.milaboratory.core.io
com.milaboratory.core.io.sequence.fastq

Uses of CompressionType in com.milaboratory.core.io

Methods in com.milaboratory.core.io that return CompressionType

Modifier and Type	Method and Description
static CompressionType	CompressionType.detectCompressionType(File file)
static CompressionType	CompressionType.detectCompressionType(String fileName)
static CompressionType	CompressionType.valueOf(String name) Returns the enum constant of this type with the specified name.
static CompressionType[]	CompressionType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Uses of CompressionType in com.milaboratory.core.io.sequence.fastq

Constructors in com.milaboratory.core.io.sequence.fastq with parameters of type CompressionType

Constructor and Description
PairedFastqReader(File file1, File file2, QualityFormat format, CompressionType ct)
PairedFastqReader(File file1, File file2, QualityFormat format, CompressionType ct, boolean replaceWildcards, boolean lazyReads)
PairedFastqReader(InputStream stream1, InputStream stream2, CompressionType compressionType)
PairedFastqReader(InputStream stream1, InputStream stream2, QualityFormat format, CompressionType ct, boolean guessQualityFormat, int bufferSize, boolean replaceWildcards, boolean lazyReads)
PairedFastqReader(String fileName1, String fileName2, QualityFormat format, CompressionType ct)
PairedFastqReader(String fileName1, String fileName2, QualityFormat format, CompressionType ct, boolean replaceWildcards, boolean lazyReads)
PairedFastqWriter(String file1, String file2, QualityFormat qualityFormat, CompressionType ct)
SingleFastqReader(File file, CompressionType ct) Creates a SingleRead stream from a FASTQ files with single-end read data
SingleFastqReader(File file, QualityFormat format, CompressionType ct) Creates a SingleRead stream from a FASTQ files with single-end read data
SingleFastqReader(InputStream stream, CompressionType ct) Creates a SingleRead stream from a FASTQ stream with single-end reads data
SingleFastqReader(InputStream stream, QualityFormat format, CompressionType ct) Creates a SingleRead stream from a FASTQ files with single-end read data
SingleFastqReader(InputStream stream, QualityFormat format, CompressionType ct, boolean guessQualityFormat, int bufferSize, boolean replaceWildcards, boolean lazyReads) Creates a SingleFastqReader stream from a FASTQ files with single-end read data
SingleFastqReader(String file, CompressionType ct) Creates a SingleRead stream from a FASTQ files with single-end read data
SingleFastqReader(String file, QualityFormat format, CompressionType ct) Creates a SingleRead stream from a FASTQ files with single-end read data
SingleFastqWriter(File file, QualityFormat qualityFormat, CompressionType ct)
SingleFastqWriter(OutputStream outputStream, QualityFormat qualityFormat, CompressionType ct)
SingleFastqWriter(OutputStream outputStream, QualityFormat qualityFormat, CompressionType ct, int bufferSize)
SingleFastqWriter(String fileName, QualityFormat qualityFormat, CompressionType ct)