| Package | Description |
|---|---|
| com.milaboratory.core.io | |
| com.milaboratory.core.io.sequence.fastq |
| Modifier and Type | Method and Description |
|---|---|
static CompressionType |
CompressionType.detectCompressionType(File file) |
static CompressionType |
CompressionType.detectCompressionType(String fileName) |
static CompressionType |
CompressionType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static CompressionType[] |
CompressionType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Constructor and Description |
|---|
PairedFastqReader(File file1,
File file2,
QualityFormat format,
CompressionType ct) |
PairedFastqReader(File file1,
File file2,
QualityFormat format,
CompressionType ct,
boolean replaceWildcards,
boolean lazyReads) |
PairedFastqReader(InputStream stream1,
InputStream stream2,
CompressionType compressionType) |
PairedFastqReader(InputStream stream1,
InputStream stream2,
QualityFormat format,
CompressionType ct,
boolean guessQualityFormat,
int bufferSize,
boolean replaceWildcards,
boolean lazyReads) |
PairedFastqReader(String fileName1,
String fileName2,
QualityFormat format,
CompressionType ct) |
PairedFastqReader(String fileName1,
String fileName2,
QualityFormat format,
CompressionType ct,
boolean replaceWildcards,
boolean lazyReads) |
PairedFastqWriter(String file1,
String file2,
QualityFormat qualityFormat,
CompressionType ct) |
SingleFastqReader(File file,
CompressionType ct)
Creates a
SingleRead stream from a FASTQ files with single-end read data |
SingleFastqReader(File file,
QualityFormat format,
CompressionType ct)
Creates a
SingleRead stream from a FASTQ files with single-end read data |
SingleFastqReader(InputStream stream,
CompressionType ct)
Creates a
SingleRead stream from a FASTQ stream with single-end reads data |
SingleFastqReader(InputStream stream,
QualityFormat format,
CompressionType ct)
Creates a
SingleRead stream from a FASTQ files with single-end read data |
SingleFastqReader(InputStream stream,
QualityFormat format,
CompressionType ct,
boolean guessQualityFormat,
int bufferSize,
boolean replaceWildcards,
boolean lazyReads)
Creates a
SingleFastqReader stream from a FASTQ files with single-end read data |
SingleFastqReader(String file,
CompressionType ct)
Creates a
SingleRead stream from a FASTQ files with single-end read data |
SingleFastqReader(String file,
QualityFormat format,
CompressionType ct)
Creates a
SingleRead stream from a FASTQ files with single-end read data |
SingleFastqWriter(File file,
QualityFormat qualityFormat,
CompressionType ct) |
SingleFastqWriter(OutputStream outputStream,
QualityFormat qualityFormat,
CompressionType ct) |
SingleFastqWriter(OutputStream outputStream,
QualityFormat qualityFormat,
CompressionType ct,
int bufferSize) |
SingleFastqWriter(String fileName,
QualityFormat qualityFormat,
CompressionType ct) |
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