com.milaboratory.core.io.sequence

Class AbstractMultiReader<R extends SequenceRead>

java.lang.Object

com.milaboratory.core.io.sequence.AbstractSequenceReader<R>

com.milaboratory.core.io.sequence.AbstractMultiReader<R>

All Implemented Interfaces:

cc.redberry.pipe.OutputPort<R>, cc.redberry.pipe.OutputPortCloseable<R>, SequenceReader<R>, SequenceReaderCloseable<R>, CanReportProgress, AutoCloseable

Direct Known Subclasses:

MultiReader, PairedReader

public abstract class AbstractMultiReader<R extends SequenceRead>
extends AbstractSequenceReader<R>
implements CanReportProgress, SequenceReader<R>, SequenceReaderCloseable<R>

Created by dbolotin on 23/06/14.

Field Summary

Fields inherited from class com.milaboratory.core.io.sequence.AbstractSequenceReader

readsCounter

Constructor Summary

Constructors

Constructor and Description
AbstractMultiReader(SingleReader... readers)

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
double	getProgress()
boolean	isFinished()
protected SingleRead[]	takeReads()

Methods inherited from class com.milaboratory.core.io.sequence.AbstractSequenceReader

addOneRead, getNumberOfReads

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.milaboratory.core.io.sequence.SequenceReader

getNumberOfReads

Methods inherited from interface cc.redberry.pipe.OutputPort

take

Constructor Detail

AbstractMultiReader

public AbstractMultiReader(SingleReader... readers)

Method Detail

takeReads

protected SingleRead[] takeReads()

close

public void close()

Specified by:

close in interface cc.redberry.pipe.OutputPortCloseable<R extends SequenceRead>

Specified by:

close in interface AutoCloseable

getProgress

public double getProgress()

Specified by:

getProgress in interface CanReportProgress

isFinished

public boolean isFinished()

Specified by:

isFinished in interface CanReportProgress