com.milaboratory.core.io.sequence

Class AbstractSequenceReader<R extends SequenceRead>

java.lang.Object

com.milaboratory.core.io.sequence.AbstractSequenceReader<R>

All Implemented Interfaces:

cc.redberry.pipe.OutputPort<R>, SequenceReader<R>

Direct Known Subclasses:

AbstractMultiReader

public abstract class AbstractSequenceReader<R extends SequenceRead>
extends Object
implements SequenceReader<R>

Field Summary

Fields

Modifier and Type	Field and Description
protected AtomicLong	readsCounter

Constructor Summary

Constructors

Constructor and Description
AbstractSequenceReader()

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addOneRead()
long	getNumberOfReads() For sequential readers returns the number of reads read till this moment, after reader is exhausted returns total number of reads.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface cc.redberry.pipe.OutputPort

take

Field Detail

readsCounter

protected final AtomicLong readsCounter

Constructor Detail

AbstractSequenceReader

public AbstractSequenceReader()

Method Detail

getNumberOfReads

public final long getNumberOfReads()

Description copied from interface: SequenceReader

For sequential readers returns the number of reads read till this moment, after reader is exhausted returns total number of reads. For random access readers returns total number of reads.

This method is thread-safe.

Specified by:

getNumberOfReads in interface SequenceReader<R extends SequenceRead>

Returns:

number of reads read till this moment for sequential readers and total number of reads for random access readers

addOneRead

protected final void addOneRead()