com.milaboratory.core.io.sequence

Interface SequenceWriter<R extends SequenceRead>

Type Parameters:

R - type of reads

All Superinterfaces:

AutoCloseable

All Known Subinterfaces:

PairedSequenceWriter, SingleSequenceWriter

All Known Implementing Classes:

FastaSequenceWriterWrapper, PairedFastqWriter, SingleFastqWriter

public interface SequenceWriter<R extends SequenceRead>
extends AutoCloseable

Common class for sequence writers.

Method Summary

Methods

Modifier and Type	Method and Description
void	close() Closes this writer
void	flush() Writes all buffers to the underlying stream
void	write(R read) Writes corresponding subtype of SequenceRead

Method Detail

write

void write(R read)

Writes corresponding subtype of SequenceRead

Parameters:

read - read

flush

void flush()

Writes all buffers to the underlying stream

close

void close()

Closes this writer

Specified by:

close in interface AutoCloseable