com.milaboratory.core.io.sequence

Class SingleReadLazy

java.lang.Object

com.milaboratory.core.io.sequence.SingleReadLazy

All Implemented Interfaces:

SequenceRead, SingleRead, Serializable, Iterable<SingleRead>

public abstract class SingleReadLazy
extends Object
implements SingleRead

Author:

Dmitry Bolotin, Stanislav Poslavsky

See Also:

Serialized Form

Method Summary

Methods

Modifier and Type	Method and Description
static SingleReadLazy	create(QualityFormat format, long id, byte[] buffer, int descriptionFrom, short dataOffset, short qualityOffset, short dataLength, short descriptionLength, boolean replaceWildcards)
boolean	equals(Object o)
NSequenceWithQuality	getData()
String	getDescription()
long	getId()
SingleRead	getRead(int i)
Iterator<SingleRead>	iterator()
int	numberOfReads()

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getDescription

public String getDescription()

Specified by:

getDescription in interface SingleRead

getData

public NSequenceWithQuality getData()

Specified by:

getData in interface SingleRead

numberOfReads

public int numberOfReads()

Specified by:

numberOfReads in interface SequenceRead

getRead

public SingleRead getRead(int i)

Specified by:

getRead in interface SequenceRead

getId

public long getId()

Specified by:

getId in interface SequenceRead

iterator

public Iterator<SingleRead> iterator()

Specified by:

iterator in interface Iterable<SingleRead>

create

public static SingleReadLazy create(QualityFormat format,
                    long id,
                    byte[] buffer,
                    int descriptionFrom,
                    short dataOffset,
                    short qualityOffset,
                    short dataLength,
                    short descriptionLength,
                    boolean replaceWildcards)

equals

public boolean equals(Object o)

Overrides:

equals in class Object