Uses of Interface
com.milaboratory.core.io.sequence.SequenceRead

Packages that use SequenceRead

Package	Description
com.milaboratory.core
com.milaboratory.core.io.sequence

Uses of SequenceRead in com.milaboratory.core

Methods in com.milaboratory.core with parameters of type SequenceRead

Modifier and Type	Method and Description
Target[]	PairedEndReadsLayout.createTargets(SequenceRead read)

Uses of SequenceRead in com.milaboratory.core.io.sequence

Classes in com.milaboratory.core.io.sequence with type parameters of type SequenceRead

Modifier and Type	Class and Description
class	AbstractMultiReader<R extends SequenceRead> Created by dbolotin on 23/06/14.
class	AbstractSequenceReader<R extends SequenceRead>
interface	SequenceReader<S extends SequenceRead> If this reader has some system resources associated with it (like opened file or network streams) implement OutputPortCloseable interface along with this interface.
interface	SequenceReaderCloseable<S extends SequenceRead> Created by dbolotin on 18/07/14.
interface	SequenceWriter<R extends SequenceRead> Common class for sequence writers.

Subinterfaces of SequenceRead in com.milaboratory.core.io.sequence

Modifier and Type	Interface and Description
interface	SingleRead Single read

Classes in com.milaboratory.core.io.sequence that implement SequenceRead

Modifier and Type	Class and Description
class	MultiRead
class	PairedRead
class	SingleReadImpl
class	SingleReadLazy

Methods in com.milaboratory.core.io.sequence that return SequenceRead

Modifier and Type	Method and Description
static SequenceRead	SequenceReadUtil.setReadId(long readId, SequenceRead read)

Methods in com.milaboratory.core.io.sequence with parameters of type SequenceRead

Modifier and Type	Method and Description
static SequenceRead	SequenceReadUtil.setReadId(long readId, SequenceRead read)