Uses of Interface
com.milaboratory.core.io.sequence.SingleRead

Packages that use SingleRead

Package	Description
com.milaboratory.core
com.milaboratory.core.io.sequence
com.milaboratory.core.io.sequence.fasta
com.milaboratory.core.io.sequence.fastq

Uses of SingleRead in com.milaboratory.core

Methods in com.milaboratory.core with parameters of type SingleRead

Modifier and Type	Method and Description
Target[]	PairedEndReadsLayout.createTargets(SingleRead read)

Uses of SingleRead in com.milaboratory.core.io.sequence

Classes in com.milaboratory.core.io.sequence that implement SingleRead

Modifier and Type	Class and Description
class	SingleReadImpl
class	SingleReadLazy

Methods in com.milaboratory.core.io.sequence that return SingleRead

Modifier and Type	Method and Description
SingleRead	PairedRead.getR1()
SingleRead	PairedRead.getR2()
SingleRead	SingleReadLazy.getRead(int i)
SingleRead	SingleReadImpl.getRead(int i)
SingleRead	SequenceRead.getRead(int i)
SingleRead	MultiRead.getRead(int i)
protected SingleRead[]	AbstractMultiReader.takeReads()

Methods in com.milaboratory.core.io.sequence that return types with arguments of type SingleRead

Modifier and Type	Method and Description
Iterator<SingleRead>	SingleReadLazy.iterator()
Iterator<SingleRead>	SingleReadImpl.iterator()
Iterator<SingleRead>	MultiRead.iterator()

Constructors in com.milaboratory.core.io.sequence with parameters of type SingleRead

Constructor and Description
MultiRead(SingleRead[] data)
PairedRead(SingleRead... data)

Uses of SingleRead in com.milaboratory.core.io.sequence.fasta

Methods in com.milaboratory.core.io.sequence.fasta that return SingleRead

Modifier and Type	Method and Description
SingleRead	FastaSequenceReaderWrapper.take()

Methods in com.milaboratory.core.io.sequence.fasta with parameters of type SingleRead

Modifier and Type	Method and Description
void	FastaSequenceWriterWrapper.write(SingleRead read)

Uses of SingleRead in com.milaboratory.core.io.sequence.fastq

Methods in com.milaboratory.core.io.sequence.fastq that return SingleRead

Modifier and Type	Method and Description
SingleRead	FastqRecordsReader.createRead(long id, QualityFormat format)
SingleRead	SingleFastqReader.take()
SingleRead	SingleFastqIndexer.take()
SingleRead	RandomAccessFastqReader.take()
SingleRead	RandomAccessFastqReader.take(long recordNumber)
protected SingleRead	RandomAccessFastqReader.take0()

Methods in com.milaboratory.core.io.sequence.fastq with parameters of type SingleRead

Modifier and Type	Method and Description
void	SingleFastqWriter.write(SingleRead read)