com.milaboratory.core.io.sequence.fasta

Class FastaRecord<S extends Sequence<S>>

java.lang.Object

com.milaboratory.core.io.sequence.fasta.FastaRecord<S>

Type Parameters:

S - sequence type

public final class FastaRecord<S extends Sequence<S>>
extends Object

Represents single fasta record

Constructor Summary

Constructors

Constructor and Description
FastaRecord(long id, String description, S sequence) General constructor.

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o)
String	getDescription() Returns description string (text that goes after ">")
long	getId() Returns serial id of fasta record (zero-based)
S	getSequence() Return sequence (main content of fasta record)
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastaRecord

public FastaRecord(long id,
           String description,
           S sequence)

General constructor.

Parameters:

id - serial id of record

description - description string

sequence - sequence

Method Detail

getId

public long getId()

Returns serial id of fasta record (zero-based)

Returns:

serial id of fasta record

getDescription

public String getDescription()

Returns description string (text that goes after ">")

Returns:

description string

getSequence

public S getSequence()

Return sequence (main content of fasta record)

Returns:

sequence

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object