com.milaboratory.core.io.sequence.fasta

Class FastaSequenceWriterWrapper

java.lang.Object

com.milaboratory.core.io.sequence.fasta.FastaSequenceWriterWrapper

All Implemented Interfaces:

SequenceWriter<SingleRead>, SingleSequenceWriter, AutoCloseable

public final class FastaSequenceWriterWrapper
extends Object
implements SingleSequenceWriter

Author:

Dmitry Bolotin, Stanislav Poslavsky

Constructor Summary

Constructors

Constructor and Description
FastaSequenceWriterWrapper(String fileName)

Method Summary

Methods

Modifier and Type	Method and Description
void	close() Closes this writer
void	flush() Writes all buffers to the underlying stream
void	write(SingleRead read) Writes corresponding subtype of SequenceRead

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastaSequenceWriterWrapper

public FastaSequenceWriterWrapper(String fileName)
                           throws FileNotFoundException

Throws:

FileNotFoundException

Method Detail

write

public void write(SingleRead read)

Description copied from interface: SequenceWriter

Writes corresponding subtype of SequenceRead

Specified by:

write in interface SequenceWriter<SingleRead>

Parameters:

read - read

flush

public void flush()

Description copied from interface: SequenceWriter

Writes all buffers to the underlying stream

Specified by:

flush in interface SequenceWriter<SingleRead>

close

public void close()

Description copied from interface: SequenceWriter

Closes this writer

Specified by:

close in interface SequenceWriter<SingleRead>

Specified by:

close in interface AutoCloseable