com.milaboratory.core.io.sequence.fasta

Class RandomAccessFastaIndex.IndexBuilder

java.lang.Object

com.milaboratory.core.io.sequence.fasta.RandomAccessFastaIndex.IndexBuilder

Enclosing class:

RandomAccessFastaIndex

public static final class RandomAccessFastaIndex.IndexBuilder
extends Object

Constructor Summary

Constructors

Constructor and Description
RandomAccessFastaIndex.IndexBuilder()
RandomAccessFastaIndex.IndexBuilder(int indexStep)

Method Summary

Methods

Modifier and Type	Method and Description
void	addIndexPoint(long position)
void	addRecord(String description, long position)
RandomAccessFastaIndex	build()
boolean	isOnRecord()
void	setLastRecordLength(long length)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RandomAccessFastaIndex.IndexBuilder

public RandomAccessFastaIndex.IndexBuilder()

RandomAccessFastaIndex.IndexBuilder

public RandomAccessFastaIndex.IndexBuilder(int indexStep)

Method Detail

isOnRecord

public boolean isOnRecord()

addRecord

public void addRecord(String description,
             long position)

addIndexPoint

public void addIndexPoint(long position)

setLastRecordLength

public void setLastRecordLength(long length)

build

public RandomAccessFastaIndex build()