com.milaboratory.core.io.sequence.fasta

Class RandomAccessFastaIndex.StreamIndexBuilder

java.lang.Object

com.milaboratory.core.io.sequence.fasta.RandomAccessFastaIndex.StreamIndexBuilder

Enclosing class:

RandomAccessFastaIndex

public static final class RandomAccessFastaIndex.StreamIndexBuilder
extends Object

Constructor Summary

Constructors

Constructor and Description
RandomAccessFastaIndex.StreamIndexBuilder()
RandomAccessFastaIndex.StreamIndexBuilder(int indexStep)
RandomAccessFastaIndex.StreamIndexBuilder(int indexStep, long streamPosition)
RandomAccessFastaIndex.StreamIndexBuilder(RandomAccessFastaIndex.IndexBuilder builder, long streamPosition)

Method Summary

Methods

Modifier and Type	Method and Description
RandomAccessFastaIndex	build()
void	processBuffer(byte[] buffer)
void	processBuffer(byte[] buffer, int offset, int length)
void	processBuffer(String str)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RandomAccessFastaIndex.StreamIndexBuilder

public RandomAccessFastaIndex.StreamIndexBuilder()

RandomAccessFastaIndex.StreamIndexBuilder

public RandomAccessFastaIndex.StreamIndexBuilder(int indexStep)

RandomAccessFastaIndex.StreamIndexBuilder

public RandomAccessFastaIndex.StreamIndexBuilder(int indexStep,
                                         long streamPosition)

RandomAccessFastaIndex.StreamIndexBuilder

public RandomAccessFastaIndex.StreamIndexBuilder(RandomAccessFastaIndex.IndexBuilder builder,
                                         long streamPosition)

Method Detail

processBuffer

public void processBuffer(String str)

processBuffer

public void processBuffer(byte[] buffer)

processBuffer

public void processBuffer(byte[] buffer,
                 int offset,
                 int length)

build

public RandomAccessFastaIndex build()