Uses of Class
com.milaboratory.core.io.sequence.fasta.RandomAccessFastaIndex

Packages that use RandomAccessFastaIndex

Package	Description
com.milaboratory.core.io.sequence.fasta

Uses of RandomAccessFastaIndex in com.milaboratory.core.io.sequence.fasta

Methods in com.milaboratory.core.io.sequence.fasta that return RandomAccessFastaIndex

Modifier and Type	Method and Description
RandomAccessFastaIndex	RandomAccessFastaIndex.StreamIndexBuilder.build()
RandomAccessFastaIndex	RandomAccessFastaIndex.IndexBuilder.build()
RandomAccessFastaIndex	RandomAccessFastaReader.getIndex()
static RandomAccessFastaIndex	RandomAccessFastaIndex.index(Path file) Index fasta file with automatic step selection or load previously created index
static RandomAccessFastaIndex	RandomAccessFastaIndex.index(Path file, boolean save) Index fasta file with automatic step selection or load previously created index
static RandomAccessFastaIndex	RandomAccessFastaIndex.index(Path file, boolean save, LongProcessReporter reporter) Index fasta file with automatic step selection or load previously created index
static RandomAccessFastaIndex	RandomAccessFastaIndex.index(Path file, int indexStep, boolean save) Index fasta file or loads previously created index
static RandomAccessFastaIndex	RandomAccessFastaIndex.index(Path file, int indexStep, boolean save, LongProcessReporter reporter) Index fasta file or loads previously created index
static RandomAccessFastaIndex	RandomAccessFastaIndex.read(InputStream stream)

Constructors in com.milaboratory.core.io.sequence.fasta with parameters of type RandomAccessFastaIndex

Constructor and Description
RandomAccessFastaReader(Path file, RandomAccessFastaIndex index, Alphabet<S> alphabet)
RandomAccessFastaReader(SeekableByteChannel channel, RandomAccessFastaIndex index, Alphabet<S> alphabet, int bufferSize)