Package com.milaboratory.core.io.sequence.fasta

Class Summary

Class	Description
FastaReader<S extends Sequence<S>>	Reads amino acid or nucleotide sequence from FASTA formatted file
FastaReader.RawFastaRecord	Used internally
FastaRecord<S extends Sequence<S>>	Represents single fasta record
FastaSequenceReaderWrapper	Converts FastaReader<NucleotideSequence> to SingleReader.
FastaSequenceWriterWrapper
FastaWriter<S extends Sequence<S>>	Writer of FASTA files.
RandomAccessFastaIndex
RandomAccessFastaIndex.IndexBuilder
RandomAccessFastaIndex.StreamIndexBuilder
RandomAccessFastaReader<S extends Sequence<S>>

Exception Summary

Exception	Description
RandomAccessFastaIndex.MultipleMatchingRecordsException
RandomAccessFastaIndex.NoSuchRecordException