com.milaboratory.core.io.sequence.fastq

Class PairedFastqWriter

java.lang.Object

com.milaboratory.core.io.sequence.fastq.PairedFastqWriter

All Implemented Interfaces:

PairedSequenceWriter, SequenceWriter<PairedRead>, AutoCloseable

public final class PairedFastqWriter
extends Object
implements PairedSequenceWriter

Constructor Summary

Constructors

Constructor and Description
PairedFastqWriter(File file1, File file2)
PairedFastqWriter(SingleFastqWriter writer1, SingleFastqWriter writer2)
PairedFastqWriter(String file1, String file2)
PairedFastqWriter(String file1, String file2, QualityFormat qualityFormat, CompressionType ct)

Method Summary

Methods

Modifier and Type	Method and Description
void	close() Closes this writer
void	flush() Writes all buffers to the underlying stream
void	write(PairedRead read) Writes corresponding subtype of SequenceRead

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PairedFastqWriter

public PairedFastqWriter(File file1,
                 File file2)
                  throws IOException

Throws:

IOException

PairedFastqWriter

public PairedFastqWriter(String file1,
                 String file2)
                  throws IOException

Throws:

IOException

PairedFastqWriter

public PairedFastqWriter(String file1,
                 String file2,
                 QualityFormat qualityFormat,
                 CompressionType ct)
                  throws IOException

Throws:

IOException

PairedFastqWriter

public PairedFastqWriter(SingleFastqWriter writer1,
                 SingleFastqWriter writer2)

Method Detail

write

public void write(PairedRead read)

Description copied from interface: SequenceWriter

Writes corresponding subtype of SequenceRead

Specified by:

write in interface SequenceWriter<PairedRead>

Parameters:

read - read

flush

public void flush()

Description copied from interface: SequenceWriter

Writes all buffers to the underlying stream

Specified by:

flush in interface SequenceWriter<PairedRead>

close

public void close()

Description copied from interface: SequenceWriter

Closes this writer

Specified by:

close in interface SequenceWriter<PairedRead>

Specified by:

close in interface AutoCloseable