Hierarchy For Package com.milaboratory.core.io.sequence.fastq

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • com.milaboratory.core.io.util.AbstractRandomAccessReader<T> (implements cc.redberry.pipe.OutputPort<T>)
    • com.milaboratory.core.io.sequence.fastq.RandomAccessFastqReader (implements java.lang.AutoCloseable, com.milaboratory.core.io.sequence.SingleReader)
  • com.milaboratory.core.io.sequence.AbstractSequenceReader<R> (implements com.milaboratory.core.io.sequence.SequenceReader<S>)
    • com.milaboratory.core.io.sequence.AbstractMultiReader<R> (implements com.milaboratory.util.CanReportProgress, com.milaboratory.core.io.sequence.SequenceReader<S>, com.milaboratory.core.io.sequence.SequenceReaderCloseable<S>)
      • com.milaboratory.core.io.sequence.PairedReader
        • com.milaboratory.core.io.sequence.fastq.PairedFastqReader
  • com.milaboratory.core.io.sequence.fastq.FastqRecordsReader (implements java.lang.AutoCloseable)
  • com.milaboratory.core.io.sequence.fastq.PairedFastqWriter (implements com.milaboratory.core.io.sequence.PairedSequenceWriter)
  • com.milaboratory.core.io.sequence.fastq.RandomAccessPairedFastqReader (implements java.lang.AutoCloseable, com.milaboratory.core.io.sequence.SequenceReader<S>)
  • com.milaboratory.core.io.sequence.fastq.SingleFastqIndexer (implements com.milaboratory.util.CanReportProgress, cc.redberry.pipe.OutputPortCloseable<T>, com.milaboratory.core.io.sequence.SingleReader)
  • com.milaboratory.core.io.sequence.fastq.SingleFastqReader (implements com.milaboratory.util.CanReportProgress, com.milaboratory.core.io.sequence.SequenceReaderCloseable<S>, com.milaboratory.core.io.sequence.SingleReader)
  • com.milaboratory.core.io.sequence.fastq.SingleFastqWriter (implements com.milaboratory.core.io.sequence.SingleSequenceWriter)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • com.milaboratory.core.io.sequence.IllegalFileFormatException
          • com.milaboratory.core.io.sequence.fastq.WrongQualityFormat

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.milaboratory.core.io.sequence.fastq.QualityFormat