Uses of Package
com.milaboratory.core.io.sequence

Packages that use com.milaboratory.core.io.sequence

Package	Description
com.milaboratory.core
com.milaboratory.core.io.sequence
com.milaboratory.core.io.sequence.fasta
com.milaboratory.core.io.sequence.fastq
com.milaboratory.core.merger

Classes in com.milaboratory.core.io.sequence used by com.milaboratory.core

Class and Description
PairedRead
SequenceRead
SingleRead Single read

Classes in com.milaboratory.core.io.sequence used by com.milaboratory.core.io.sequence

Class and Description
AbstractMultiReader Created by dbolotin on 23/06/14.
AbstractSequenceReader
MultiRead
PairedRead
SequenceRead
SequenceReader If this reader has some system resources associated with it (like opened file or network streams) implement OutputPortCloseable interface along with this interface.
SequenceReaderCloseable Created by dbolotin on 18/07/14.
SequenceWriter Common class for sequence writers.
SingleRead Single read
SingleReader
SingleReadLazy

Classes in com.milaboratory.core.io.sequence used by com.milaboratory.core.io.sequence.fasta

Class and Description
SequenceReader If this reader has some system resources associated with it (like opened file or network streams) implement OutputPortCloseable interface along with this interface.
SequenceReaderCloseable Created by dbolotin on 18/07/14.
SequenceWriter Common class for sequence writers.
SingleRead Single read
SingleReader
SingleSequenceWriter

Classes in com.milaboratory.core.io.sequence used by com.milaboratory.core.io.sequence.fastq

Class and Description
AbstractMultiReader Created by dbolotin on 23/06/14.
AbstractSequenceReader
IllegalFileFormatException
PairedRead
PairedReader Created by dbolotin on 23/06/14.
PairedSequenceWriter
SequenceReader If this reader has some system resources associated with it (like opened file or network streams) implement OutputPortCloseable interface along with this interface.
SequenceReaderCloseable Created by dbolotin on 18/07/14.
SequenceWriter Common class for sequence writers.
SingleRead Single read
SingleReader
SingleSequenceWriter

Classes in com.milaboratory.core.io.sequence used by com.milaboratory.core.merger

Class and Description
PairedRead