| Package | Description |
|---|---|
| com.milaboratory.core.io.sequence.fastq | |
| com.milaboratory.core.io.util |
| Modifier and Type | Method and Description |
|---|---|
FileIndex |
SingleFastqIndexer.createIndex() |
| Constructor and Description |
|---|
RandomAccessFastqReader(File file,
FileIndex fileIndex,
boolean replaceWildcards,
boolean lazyReads)
Creates reader of specified FASTQ file with specified index.
|
RandomAccessFastqReader(RandomAccessFile file,
FileIndex fileIndex,
boolean replaceWildcards,
boolean lazyReads)
Creates reader of specified FASTQ file with specified index.
|
RandomAccessPairedFastqReader(RandomAccessFile file1,
FileIndex index1,
RandomAccessFile file2,
FileIndex index2) |
RandomAccessPairedFastqReader(RandomAccessFile file1,
FileIndex index1,
RandomAccessFile file2,
FileIndex index2,
boolean replaceWildcards,
boolean lazyReads) |
| Modifier and Type | Field and Description |
|---|---|
protected FileIndex |
AbstractRandomAccessReader.fileIndex
Index of file
|
| Modifier and Type | Method and Description |
|---|---|
FileIndex |
FileIndexBuilder.createAndDestroy()
Creates
FileIndex assembled by this builder. |
static FileIndex |
FileIndex.read(File file)
Reads index from file.
|
static FileIndex |
FileIndex.read(InputStream stream)
Reads index from input stream.
|
static FileIndex |
FileIndex.read(String fileName)
Reads index from file.
|
| Constructor and Description |
|---|
AbstractRandomAccessReader(FileIndex fileIndex,
RandomAccessFile file) |
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