Uses of Class
com.milaboratory.core.io.util.FileIndex

Packages that use FileIndex

Package	Description
com.milaboratory.core.io.sequence.fastq
com.milaboratory.core.io.util

Uses of FileIndex in com.milaboratory.core.io.sequence.fastq

Methods in com.milaboratory.core.io.sequence.fastq that return FileIndex

Modifier and Type	Method and Description
FileIndex	SingleFastqIndexer.createIndex()

Constructors in com.milaboratory.core.io.sequence.fastq with parameters of type FileIndex

Constructor and Description
RandomAccessFastqReader(File file, FileIndex fileIndex, boolean replaceWildcards, boolean lazyReads) Creates reader of specified FASTQ file with specified index.
RandomAccessFastqReader(RandomAccessFile file, FileIndex fileIndex, boolean replaceWildcards, boolean lazyReads) Creates reader of specified FASTQ file with specified index.
RandomAccessPairedFastqReader(RandomAccessFile file1, FileIndex index1, RandomAccessFile file2, FileIndex index2)
RandomAccessPairedFastqReader(RandomAccessFile file1, FileIndex index1, RandomAccessFile file2, FileIndex index2, boolean replaceWildcards, boolean lazyReads)

Uses of FileIndex in com.milaboratory.core.io.util

Fields in com.milaboratory.core.io.util declared as FileIndex

Modifier and Type	Field and Description
protected FileIndex	AbstractRandomAccessReader.fileIndex Index of file

Methods in com.milaboratory.core.io.util that return FileIndex

Modifier and Type	Method and Description
FileIndex	FileIndexBuilder.createAndDestroy() Creates FileIndex assembled by this builder.
static FileIndex	FileIndex.read(File file) Reads index from file.
static FileIndex	FileIndex.read(InputStream stream) Reads index from input stream.
static FileIndex	FileIndex.read(String fileName) Reads index from file.

Constructors in com.milaboratory.core.io.util with parameters of type FileIndex

Constructor and Description
AbstractRandomAccessReader(FileIndex fileIndex, RandomAccessFile file)