public final class MergerParameters extends Object implements Serializable
| Modifier and Type | Class and Description |
|---|---|
static class |
MergerParameters.IdentityType |
| Modifier and Type | Field and Description |
|---|---|
static int |
DEFAULT_MAX_QUALITY_VALUE |
| Constructor and Description |
|---|
MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm,
PairedEndReadsLayout partsLayout,
int minimalOverlap,
Integer maxQuality,
double minimalIdentity,
MergerParameters.IdentityType identityType) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
equals(Object o) |
MergerParameters.IdentityType |
getIdentityType() |
int |
getMaxQuality() |
double |
getMinimalIdentity() |
int |
getMinimalOverlap() |
PairedEndReadsLayout |
getPartsLayout() |
QualityMergingAlgorithm |
getQualityMergingAlgorithm() |
int |
hashCode() |
MergerParameters |
overrideMinimalIdentity(double newIdentity) |
MergerParameters |
overrideReadsLayout(PairedEndReadsLayout partsLayout) |
public static final int DEFAULT_MAX_QUALITY_VALUE
public MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout partsLayout, int minimalOverlap, Integer maxQuality, double minimalIdentity, MergerParameters.IdentityType identityType)
public int getMinimalOverlap()
public double getMinimalIdentity()
public int getMaxQuality()
public QualityMergingAlgorithm getQualityMergingAlgorithm()
public PairedEndReadsLayout getPartsLayout()
public MergerParameters.IdentityType getIdentityType()
public MergerParameters overrideReadsLayout(PairedEndReadsLayout partsLayout)
public MergerParameters overrideMinimalIdentity(double newIdentity)
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