| Package | Description |
|---|---|
| com.milaboratory.core.merger |
| Modifier and Type | Method and Description |
|---|---|
MergerParameters.IdentityType |
PairedReadMergingResult.getIdentityType() |
MergerParameters.IdentityType |
MergerParameters.getIdentityType() |
static MergerParameters.IdentityType |
MergerParameters.IdentityType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static MergerParameters.IdentityType[] |
MergerParameters.IdentityType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
static double |
MismatchOnlyPairedReadMerger.identity(MergerParameters.IdentityType identityType,
NSequenceWithQuality seq1,
int offset1,
NSequenceWithQuality seq2,
int offset2,
int length) |
| Constructor and Description |
|---|
MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm,
PairedEndReadsLayout partsLayout,
int minimalOverlap,
Integer maxQuality,
double minimalIdentity,
MergerParameters.IdentityType identityType) |
MismatchOnlyPairedReadMerger(int minOverlap,
double minimalIdentity,
MergerParameters.IdentityType identityType,
int maxScoreValue,
QualityMergingAlgorithm qualityMergingAlgorithm,
PairedEndReadsLayout pairedEndReadsLayout)
Creates paired-end reads merger.
|
PairedReadMergingResult(PairedRead originalRead,
NSequenceWithQuality overlappedSequence,
int overlap,
int errors,
boolean reversed,
int offset,
MergerParameters.IdentityType identityType,
double identity)
Constructor for successful merging result.
|
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