Uses of Class
com.milaboratory.core.merger.MergerParameters.IdentityType

Packages that use MergerParameters.IdentityType

Package	Description
com.milaboratory.core.merger

Uses of MergerParameters.IdentityType in com.milaboratory.core.merger

Methods in com.milaboratory.core.merger that return MergerParameters.IdentityType

Modifier and Type	Method and Description
MergerParameters.IdentityType	PairedReadMergingResult.getIdentityType()
MergerParameters.IdentityType	MergerParameters.getIdentityType()
static MergerParameters.IdentityType	MergerParameters.IdentityType.valueOf(String name) Returns the enum constant of this type with the specified name.
static MergerParameters.IdentityType[]	MergerParameters.IdentityType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in com.milaboratory.core.merger with parameters of type MergerParameters.IdentityType

Modifier and Type	Method and Description
static double	MismatchOnlyPairedReadMerger.identity(MergerParameters.IdentityType identityType, NSequenceWithQuality seq1, int offset1, NSequenceWithQuality seq2, int offset2, int length)

Constructors in com.milaboratory.core.merger with parameters of type MergerParameters.IdentityType

Constructor and Description
MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout partsLayout, int minimalOverlap, Integer maxQuality, double minimalIdentity, MergerParameters.IdentityType identityType)
MismatchOnlyPairedReadMerger(int minOverlap, double minimalIdentity, MergerParameters.IdentityType identityType, int maxScoreValue, QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout pairedEndReadsLayout) Creates paired-end reads merger.
PairedReadMergingResult(PairedRead originalRead, NSequenceWithQuality overlappedSequence, int overlap, int errors, boolean reversed, int offset, MergerParameters.IdentityType identityType, double identity) Constructor for successful merging result.