Uses of Class
com.milaboratory.core.merger.QualityMergingAlgorithm

Packages that use QualityMergingAlgorithm

Package	Description
com.milaboratory.core.merger

Uses of QualityMergingAlgorithm in com.milaboratory.core.merger

Methods in com.milaboratory.core.merger that return QualityMergingAlgorithm

Modifier and Type	Method and Description
static QualityMergingAlgorithm	QualityMergingAlgorithm.getFromCLIName(String cliName)
QualityMergingAlgorithm	MergerParameters.getQualityMergingAlgorithm()
static QualityMergingAlgorithm	QualityMergingAlgorithm.valueOf(String name) Returns the enum constant of this type with the specified name.
static QualityMergingAlgorithm[]	QualityMergingAlgorithm.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in com.milaboratory.core.merger with parameters of type QualityMergingAlgorithm

Constructor and Description
MergerParameters(QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout partsLayout, int minimalOverlap, Integer maxQuality, double minimalIdentity, MergerParameters.IdentityType identityType)
MismatchOnlyPairedReadMerger(int minOverlap, double minimalIdentity, int maxScoreValue, QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout pairedEndReadsLayout) Creates paired-end reads merger.
MismatchOnlyPairedReadMerger(int minOverlap, double minimalIdentity, MergerParameters.IdentityType identityType, int maxScoreValue, QualityMergingAlgorithm qualityMergingAlgorithm, PairedEndReadsLayout pairedEndReadsLayout) Creates paired-end reads merger.