Uses of Interface
com.milaboratory.core.motif.BitapMatcher

Packages that use BitapMatcher

Package	Description
com.milaboratory.core.motif

Uses of BitapMatcher in com.milaboratory.core.motif

Classes in com.milaboratory.core.motif that implement BitapMatcher

Modifier and Type	Class and Description
class	BitapMatcherFilter
class	BitapMatcherImpl

Methods in com.milaboratory.core.motif that return BitapMatcher

Modifier and Type	Method and Description
BitapMatcher	BitapPattern.exactMatcher(Sequence sequence, int from, int to)
BitapMatcher	BitapPattern.substitutionAndIndelMatcherFirst(int maxNumberOfErrors, Sequence sequence) Returns a BitapMatcher preforming a fuzzy search in a whole sequence.
BitapMatcher	BitapPattern.substitutionAndIndelMatcherFirst(int maxNumberOfErrors, Sequence sequence, int from, int to) Returns a BitapMatcher preforming a fuzzy search in a subsequence of sequence.
BitapMatcher	BitapPattern.substitutionAndIndelMatcherLast(int maxNumberOfErrors, Sequence sequence) Returns a BitapMatcher preforming a fuzzy search in a whole sequence.
BitapMatcher	BitapPattern.substitutionAndIndelMatcherLast(int maxNumberOfErrors, Sequence sequence, int from, int to) Returns a BitapMatcher preforming a fuzzy search in a subsequence of sequence.
BitapMatcher	BitapPattern.substitutionOnlyMatcherFirst(int substitutions, Sequence sequence) Returns a BitapMatcher preforming a fuzzy search in a whole sequence.
BitapMatcher	BitapPattern.substitutionOnlyMatcherFirst(int substitutions, Sequence sequence, int from, int to) Returns a BitapMatcher preforming a fuzzy search in a subsequence of sequence.

Constructors in com.milaboratory.core.motif with parameters of type BitapMatcher

Constructor and Description
BitapMatcherFilter(BitapMatcher nestedMatcher)