| Package | Description |
|---|---|
| com.milaboratory.core.motif |
| Modifier and Type | Class and Description |
|---|---|
class |
BitapMatcherFilter |
class |
BitapMatcherImpl |
| Modifier and Type | Method and Description |
|---|---|
BitapMatcher |
BitapPattern.exactMatcher(Sequence sequence,
int from,
int to) |
BitapMatcher |
BitapPattern.substitutionAndIndelMatcherFirst(int maxNumberOfErrors,
Sequence sequence)
Returns a BitapMatcher preforming a fuzzy search in a whole
sequence. |
BitapMatcher |
BitapPattern.substitutionAndIndelMatcherFirst(int maxNumberOfErrors,
Sequence sequence,
int from,
int to)
Returns a BitapMatcher preforming a fuzzy search in a subsequence of
sequence. |
BitapMatcher |
BitapPattern.substitutionAndIndelMatcherLast(int maxNumberOfErrors,
Sequence sequence)
Returns a BitapMatcher preforming a fuzzy search in a whole
sequence. |
BitapMatcher |
BitapPattern.substitutionAndIndelMatcherLast(int maxNumberOfErrors,
Sequence sequence,
int from,
int to)
Returns a BitapMatcher preforming a fuzzy search in a subsequence of
sequence. |
BitapMatcher |
BitapPattern.substitutionOnlyMatcherFirst(int substitutions,
Sequence sequence)
Returns a BitapMatcher preforming a fuzzy search in a whole
sequence. |
BitapMatcher |
BitapPattern.substitutionOnlyMatcherFirst(int substitutions,
Sequence sequence,
int from,
int to)
Returns a BitapMatcher preforming a fuzzy search in a subsequence of
sequence. |
| Constructor and Description |
|---|
BitapMatcherFilter(BitapMatcher nestedMatcher) |
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