com.milaboratory.core.mutations.generator

Class SubstitutionModels

java.lang.Object

com.milaboratory.core.mutations.generator.SubstitutionModels

public final class SubstitutionModels
extends Object

Method Summary

Methods

Modifier and Type	Method and Description
static SubstitutionModel	getEmpiricalNucleotideSubstitutionModel()
static SubstitutionModel	getEmpiricalNucleotideSubstitutionModelWithNoise(org.apache.commons.math3.random.RandomGenerator rd, double minFactor, double maxFactor)
static SubstitutionModel	getUniformNucleotideSubstitutionModel(double substitutionProbability)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getEmpiricalNucleotideSubstitutionModel

public static SubstitutionModel getEmpiricalNucleotideSubstitutionModel()

getEmpiricalNucleotideSubstitutionModelWithNoise

public static SubstitutionModel getEmpiricalNucleotideSubstitutionModelWithNoise(org.apache.commons.math3.random.RandomGenerator rd,
                                                                 double minFactor,
                                                                 double maxFactor)

getUniformNucleotideSubstitutionModel

public static SubstitutionModel getUniformNucleotideSubstitutionModel(double substitutionProbability)