Uses of Class
com.milaboratory.core.mutations.generator.SubstitutionModel

Packages that use SubstitutionModel

Package	Description
com.milaboratory.core.mutations.generator

Uses of SubstitutionModel in com.milaboratory.core.mutations.generator

Methods in com.milaboratory.core.mutations.generator that return SubstitutionModel

Modifier and Type	Method and Description
SubstitutionModel	SubstitutionModelBuilder.build()
static SubstitutionModel	SubstitutionModels.getEmpiricalNucleotideSubstitutionModel()
static SubstitutionModel	SubstitutionModels.getEmpiricalNucleotideSubstitutionModelWithNoise(org.apache.commons.math3.random.RandomGenerator rd, double minFactor, double maxFactor)
static SubstitutionModel	SubstitutionModels.getUniformNucleotideSubstitutionModel(double substitutionProbability)
SubstitutionModel	SubstitutionModel.multiplyProbabilities(double factor)

Constructors in com.milaboratory.core.mutations.generator with parameters of type SubstitutionModel

Constructor and Description
GenericNucleotideMutationModel(SubstitutionModel substitutionModel, double deletionProbability, double insertionProbability)
GenericNucleotideMutationModel(SubstitutionModel substitutionModel, double deletionProbability, double insertionProbability, long seed)