| Package | Description |
|---|---|
| com.milaboratory.core.mutations.generator |
| Modifier and Type | Method and Description |
|---|---|
SubstitutionModel |
SubstitutionModelBuilder.build() |
static SubstitutionModel |
SubstitutionModels.getEmpiricalNucleotideSubstitutionModel() |
static SubstitutionModel |
SubstitutionModels.getEmpiricalNucleotideSubstitutionModelWithNoise(org.apache.commons.math3.random.RandomGenerator rd,
double minFactor,
double maxFactor) |
static SubstitutionModel |
SubstitutionModels.getUniformNucleotideSubstitutionModel(double substitutionProbability) |
SubstitutionModel |
SubstitutionModel.multiplyProbabilities(double factor) |
| Constructor and Description |
|---|
GenericNucleotideMutationModel(SubstitutionModel substitutionModel,
double deletionProbability,
double insertionProbability) |
GenericNucleotideMutationModel(SubstitutionModel substitutionModel,
double deletionProbability,
double insertionProbability,
long seed) |
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