com.milaboratory.core.sequence

Class Alphabets

java.lang.Object

com.milaboratory.core.sequence.Alphabets

public final class Alphabets
extends Object

Registry of all alphabets.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	Alphabets.Deserializer
static class	Alphabets.Serializer

Method Summary

Methods

Modifier and Type	Method and Description
static Collection<Alphabet>	getAll() Returns unmodifiable collection of all registered alphabets.
static Alphabet	getByFirstLetterOfName(char letter) Searches for instance of Alphabet using first letter of it's name
static Alphabet	getById(byte id) Returns instance of Alphabet from its byte id.
static Alphabet	getByName(String name) Returns instance of Alphabet from its string name.
static void	register(Alphabet alphabet) Register new alphabet

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

register

public static void register(Alphabet alphabet)

Register new alphabet

Parameters:

alphabet - alphabet

getByName

public static Alphabet getByName(String name)

Returns instance of Alphabet from its string name.

Parameters:

name - string name of alphabet

Returns:

instance of Alphabet from its string name

getByFirstLetterOfName

public static Alphabet getByFirstLetterOfName(char letter)

Searches for instance of Alphabet using first letter of it's name

Parameters:

letter - first letter of alphabet's name

Returns:

instance of Alphabet

getById

public static Alphabet getById(byte id)

Returns instance of Alphabet from its byte id.

Parameters:

id - byte id of alphabet

Returns:

instance of Alphabet from its byte id

getAll

public static Collection<Alphabet> getAll()

Returns unmodifiable collection of all registered alphabets.

Returns:

unmodifiable collection of all registered alphabets