com.milaboratory.core.sequence

Class AminoAcidSequence.AminoAcidSequencePosition

java.lang.Object

com.milaboratory.core.sequence.AminoAcidSequence.AminoAcidSequencePosition

Enclosing class:

AminoAcidSequence

public static final class AminoAcidSequence.AminoAcidSequencePosition
extends Object

This class represents mapping of nucleotide sequence position onto translated amino acid sequence. Use value of aminoAcidPosition field, of use floor() or ceil() methods to get integer value.

Field Summary

Fields

Modifier and Type	Field and Description
int	aminoAcidPosition Position of amino acid in aa sequence
byte	positionInTriplet Position of particular nucleotide in triplet encoding amino acid at aminoAcidPosition.

Constructor Summary

Constructors

Constructor and Description
AminoAcidSequence.AminoAcidSequencePosition(int aminoAcidPosition, int positionInTriplet)

Method Summary

Methods

Modifier and Type	Method and Description
int	ceil()
boolean	equals(Object o)
int	floor()
int	hashCode()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

aminoAcidPosition

public final int aminoAcidPosition

Position of amino acid in aa sequence

positionInTriplet

public final byte positionInTriplet

Position of particular nucleotide in triplet encoding amino acid at aminoAcidPosition.

Constructor Detail

AminoAcidSequence.AminoAcidSequencePosition

public AminoAcidSequence.AminoAcidSequencePosition(int aminoAcidPosition,
                                           int positionInTriplet)

Method Detail

floor

public int floor()

ceil

public int ceil()

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object