com.milaboratory.core.sequence

Class ArraySeqBuilder<S extends AbstractSeq<S>,B extends ArraySeqBuilder<S,B>>

java.lang.Object

com.milaboratory.core.sequence.ArraySeqBuilder<S,B>

All Implemented Interfaces:

SeqBuilder<S>

Direct Known Subclasses:

SequenceQualityBuilder

public abstract class ArraySeqBuilder<S extends AbstractSeq<S>,B extends ArraySeqBuilder<S,B>>
extends Object
implements SeqBuilder<S>

Method Summary

Methods

Modifier and Type	Method and Description
B	append(byte value)
B	append(S seq) Appends seq.
abstract B	clone() Returns a deep copy of this builder
S	createAndDestroy() Creates the sequence and destroys this builder.
B	ensureCapacity(int capacity) Ensures capacity of this builder.
protected void	ensureInternalCapacity(int newSize)
int	size() Size of sequence being created.

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

size

public int size()

Description copied from interface: SeqBuilder

Size of sequence being created.

Specified by:

size in interface SeqBuilder<S extends AbstractSeq<S>>

Returns:

size

ensureInternalCapacity

protected void ensureInternalCapacity(int newSize)

ensureCapacity

public B ensureCapacity(int capacity)

Description copied from interface: SeqBuilder

Ensures capacity of this builder.

Specified by:

ensureCapacity in interface SeqBuilder<S extends AbstractSeq<S>>

Parameters:

capacity - capacity

Returns:

this

createAndDestroy

public S createAndDestroy()

Description copied from interface: SeqBuilder

Creates the sequence and destroys this builder.

Specified by:

createAndDestroy in interface SeqBuilder<S extends AbstractSeq<S>>

Returns:

created sequence

append

public B append(byte value)

append

public B append(S seq)

Description copied from interface: SeqBuilder

Appends seq.

Specified by:

append in interface SeqBuilder<S extends AbstractSeq<S>>

Parameters:

seq - seq

Returns:

this

clone

public abstract B clone()

Description copied from interface: SeqBuilder

Returns a deep copy of this builder

Specified by:

clone in interface SeqBuilder<S extends AbstractSeq<S>>

Overrides:

clone in class Object

Returns:

a deep copy of this builder