com.milaboratory.core.sequence

Interface SequenceBuilder<S extends Sequence<S>>

All Superinterfaces:

SeqBuilder<S>

public interface SequenceBuilder<S extends Sequence<S>>
extends SeqBuilder<S>

Interface for factory class for a certain type of sequence.

Author:

Bolotin Dmitriy (bolotin.dmitriy@gmail.com), Shugay Mikhail (mikhail.shugay@gmail.com)

See Also:

Sequence

Method Summary

Methods

Modifier and Type	Method and Description
SequenceBuilder<S>	append(byte letter) Appends letter.
SequenceBuilder<S>	append(byte[] letters) Appends letters array.
SequenceBuilder<S>	append(S seq) Appends seq.
SequenceBuilder<S>	clone() Returns a deep copy of this builder
S	createAndDestroy() Creates the sequence and destroys this builder.
SequenceBuilder<S>	ensureCapacity(int capacity) Ensures capacity of this builder.
SequenceBuilder<S>	set(int position, byte letter) Sets letter at the specified position.

Methods inherited from interface com.milaboratory.core.sequence.SeqBuilder

size

Method Detail

set

SequenceBuilder<S> set(int position,
                     byte letter)

Sets letter at the specified position.

Parameters:

position - position positin >=0 && positin < size()

letter - letter

Returns:

this

append

SequenceBuilder<S> append(byte letter)

Appends letter.

Parameters:

letter - letter

Returns:

this

append

SequenceBuilder<S> append(byte[] letters)

Appends letters array.

Parameters:

letters - array of letters

Returns:

this

append

SequenceBuilder<S> append(S seq)

Description copied from interface: SeqBuilder

Appends seq.

Specified by:

append in interface SeqBuilder<S extends Sequence<S>>

Parameters:

seq - seq

Returns:

this

ensureCapacity

SequenceBuilder<S> ensureCapacity(int capacity)

Description copied from interface: SeqBuilder

Ensures capacity of this builder.

Specified by:

ensureCapacity in interface SeqBuilder<S extends Sequence<S>>

Parameters:

capacity - capacity

Returns:

this

clone

SequenceBuilder<S> clone()

Description copied from interface: SeqBuilder

Returns a deep copy of this builder

Specified by:

clone in interface SeqBuilder<S extends Sequence<S>>

Returns:

a deep copy of this builder

createAndDestroy

S createAndDestroy()

Description copied from interface: SeqBuilder

Creates the sequence and destroys this builder.

Specified by:

createAndDestroy in interface SeqBuilder<S extends Sequence<S>>

Returns:

created sequence