com.milaboratory.core.sequence

Class TranslationParameters

java.lang.Object

com.milaboratory.core.sequence.TranslationParameters

public final class TranslationParameters
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static TranslationParameters	FromCenter
static TranslationParameters	FromLeftWithIncompleteCodon
static TranslationParameters	FromLeftWithoutIncompleteCodon
static TranslationParameters	FromRightWithIncompleteCodon
static TranslationParameters	FromRightWithoutIncompleteCodon

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o)
byte	getFrame()
Boolean	getFromLeft()
static Collection<TranslationParameters>	getPreDefinedParameters()
int	hashCode()
boolean	isIncludeIncomplete()
String	toString()
static TranslationParameters	withIncompleteCodon(int inFramePosition) E.g.
static TranslationParameters	withoutIncompleteCodon(int inFramePosition) E.g.

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

FromCenter

public static final TranslationParameters FromCenter

FromLeftWithIncompleteCodon

public static final TranslationParameters FromLeftWithIncompleteCodon

FromLeftWithoutIncompleteCodon

public static final TranslationParameters FromLeftWithoutIncompleteCodon

FromRightWithIncompleteCodon

public static final TranslationParameters FromRightWithIncompleteCodon

FromRightWithoutIncompleteCodon

public static final TranslationParameters FromRightWithoutIncompleteCodon

Method Detail

getFrame

public byte getFrame()

getFromLeft

public Boolean getFromLeft()

isIncludeIncomplete

public boolean isIncludeIncomplete()

withIncompleteCodon

public static TranslationParameters withIncompleteCodon(int inFramePosition)

E.g. withIncompleteCodon(3) == withIncompleteCodon(6) and withIncompleteCodon(1) == withIncompleteCodon(4)

Parameters:

inFramePosition - position of first nucleotide in any of in-frame triplets

withoutIncompleteCodon

public static TranslationParameters withoutIncompleteCodon(int inFramePosition)

E.g. withIncompleteCodon(3) == withIncompleteCodon(6) and withIncompleteCodon(1) == withIncompleteCodon(4)

Parameters:

inFramePosition - position of first nucleotide in any of in-frame triplets

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object

getPreDefinedParameters

public static Collection<TranslationParameters> getPreDefinedParameters()