| Package | Description |
|---|---|
| com.milaboratory.core.sequence |
| Modifier and Type | Interface and Description |
|---|---|
interface |
Seq<S extends Seq<S>>
Common interface for all objects representing sequence-like objects like (parent of all subtypes of
Sequence; SequenceQuality; SequenceWithQuality) |
interface |
SeqBuilder<S extends Seq<S>>
Interface for classes that build seq objects.
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
NSeq<S extends NSeq<S>> |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractSeq<S extends AbstractSeq<S>> |
class |
AminoAcidSequence
Representation of amino acid sequences.
|
class |
NSequenceWithQuality
Container of nucleotide sequence with its quality.
|
class |
NucleotideSequence
Representation of nucleotide sequence.
|
class |
Sequence<S extends Sequence<S>>
Parent class for all types of sequences.
|
class |
SequenceQuality
Representation of nucleotide sequence quality based on phred quality scores.
|
| Modifier and Type | Method and Description |
|---|---|
static <S extends Seq<S>> |
SequencesUtils.concatenate(S... sequences)
Returns a concatenation of several sequences.
|
| Modifier and Type | Method and Description |
|---|---|
static <S extends Seq<S>> |
SequencesUtils.concatenate(S... sequences)
Returns a concatenation of several sequences.
|
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