Uses of Interface
com.milaboratory.core.sequence.Seq

Packages that use Seq

Package	Description
com.milaboratory.core.sequence

Uses of Seq in com.milaboratory.core.sequence

Classes in com.milaboratory.core.sequence with type parameters of type Seq

Modifier and Type	Interface and Description
interface	Seq<S extends Seq<S>> Common interface for all objects representing sequence-like objects like (parent of all subtypes of Sequence; SequenceQuality; SequenceWithQuality)
interface	SeqBuilder<S extends Seq<S>> Interface for classes that build seq objects.

Subinterfaces of Seq in com.milaboratory.core.sequence

Modifier and Type	Interface and Description
interface	NSeq<S extends NSeq<S>>

Classes in com.milaboratory.core.sequence that implement Seq

Modifier and Type	Class and Description
class	AbstractSeq<S extends AbstractSeq<S>>
class	AminoAcidSequence Representation of amino acid sequences.
class	NSequenceWithQuality Container of nucleotide sequence with its quality.
class	NucleotideSequence Representation of nucleotide sequence.
class	Sequence<S extends Sequence<S>> Parent class for all types of sequences.
class	SequenceQuality Representation of nucleotide sequence quality based on phred quality scores.

Methods in com.milaboratory.core.sequence with type parameters of type Seq

Modifier and Type	Method and Description
static <S extends Seq<S>> S	SequencesUtils.concatenate(S... sequences) Returns a concatenation of several sequences.

Methods in com.milaboratory.core.sequence with parameters of type Seq

Modifier and Type	Method and Description
static <S extends Seq<S>> S	SequencesUtils.concatenate(S... sequences) Returns a concatenation of several sequences.