Uses of Interface
com.milaboratory.core.sequence.provider.SequenceProvider

Packages that use SequenceProvider

Package	Description
com.milaboratory.core.io.sequence.fasta
com.milaboratory.core.sequence.provider

Uses of SequenceProvider in com.milaboratory.core.io.sequence.fasta

Methods in com.milaboratory.core.io.sequence.fasta that return SequenceProvider

Modifier and Type	Method and Description
SequenceProvider<S>	RandomAccessFastaReader.getSequenceProvider(int id)
SequenceProvider<S>	RandomAccessFastaReader.getSequenceProvider(String id)

Uses of SequenceProvider in com.milaboratory.core.sequence.provider

Classes in com.milaboratory.core.sequence.provider that implement SequenceProvider

Modifier and Type	Class and Description
class	CachedSequenceProvider<S extends Sequence<S>>
static class	SequenceProviderUtils.LazySequenceProvider<S extends Sequence<S>>

Methods in com.milaboratory.core.sequence.provider that return SequenceProvider

Modifier and Type	Method and Description
SequenceProvider<S>	SequenceProviderFactory.create()
static <S extends Sequence<S>> SequenceProvider<S>	SequenceProviderUtils.fromSequence(S sequence)
static <S extends Sequence<S>> SequenceProvider<S>	SequenceProviderUtils.lazyProvider(SequenceProviderFactory<S> factory)
static SequenceProvider<NucleotideSequence>	SequenceProviderUtils.reversedProvider(SequenceProvider<NucleotideSequence> provider)
static <S extends Sequence<S>> SequenceProvider<S>	SequenceProviderUtils.subProvider(SequenceProvider<S> provider, Range targetRange)

Methods in com.milaboratory.core.sequence.provider with parameters of type SequenceProvider

Modifier and Type	Method and Description
static SequenceProvider<NucleotideSequence>	SequenceProviderUtils.reversedProvider(SequenceProvider<NucleotideSequence> provider)
static <S extends Sequence<S>> SequenceProvider<S>	SequenceProviderUtils.subProvider(SequenceProvider<S> provider, Range targetRange)

Constructors in com.milaboratory.core.sequence.provider with parameters of type SequenceProvider

Constructor and Description
CachedSequenceProvider(Alphabet<S> alphabet, SequenceProvider<S> provider) Cached sequence provider wrapping specified sequence provider.