| Package | Description |
|---|---|
| com.milaboratory.core.io.sequence.fasta | |
| com.milaboratory.core.sequence.provider |
| Modifier and Type | Method and Description |
|---|---|
SequenceProvider<S> |
RandomAccessFastaReader.getSequenceProvider(int id) |
SequenceProvider<S> |
RandomAccessFastaReader.getSequenceProvider(String id) |
| Modifier and Type | Class and Description |
|---|---|
class |
CachedSequenceProvider<S extends Sequence<S>> |
static class |
SequenceProviderUtils.LazySequenceProvider<S extends Sequence<S>> |
| Modifier and Type | Method and Description |
|---|---|
SequenceProvider<S> |
SequenceProviderFactory.create() |
static <S extends Sequence<S>> |
SequenceProviderUtils.fromSequence(S sequence) |
static <S extends Sequence<S>> |
SequenceProviderUtils.lazyProvider(SequenceProviderFactory<S> factory) |
static SequenceProvider<NucleotideSequence> |
SequenceProviderUtils.reversedProvider(SequenceProvider<NucleotideSequence> provider) |
static <S extends Sequence<S>> |
SequenceProviderUtils.subProvider(SequenceProvider<S> provider,
Range targetRange) |
| Modifier and Type | Method and Description |
|---|---|
static SequenceProvider<NucleotideSequence> |
SequenceProviderUtils.reversedProvider(SequenceProvider<NucleotideSequence> provider) |
static <S extends Sequence<S>> |
SequenceProviderUtils.subProvider(SequenceProvider<S> provider,
Range targetRange) |
| Constructor and Description |
|---|
CachedSequenceProvider(Alphabet<S> alphabet,
SequenceProvider<S> provider)
Cached sequence provider wrapping specified sequence provider.
|
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