com.milaboratory.core.sequence.quality

Class AverageQualityAggregator

java.lang.Object

com.milaboratory.core.sequence.quality.AverageQualityAggregator

All Implemented Interfaces:

QualityAggregator

public class AverageQualityAggregator
extends Object
implements QualityAggregator

Constructor Summary

Constructors

Constructor and Description
AverageQualityAggregator(int size)

Method Summary

Methods

Modifier and Type	Method and Description
static long	add0(long a, long b)
static long	add1(long a, long b)
static long	add2(long a, long b)
static long	add3(long a, long b)
void	aggregate(SequenceQuality quality)
SequenceQuality	getQuality()
byte	getState()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AverageQualityAggregator

public AverageQualityAggregator(int size)

Method Detail

aggregate

public void aggregate(SequenceQuality quality)

Specified by:

aggregate in interface QualityAggregator

getState

public byte getState()

add0

public static long add0(long a,
        long b)

add1

public static long add1(long a,
        long b)

add2

public static long add2(long a,
        long b)

add3

public static long add3(long a,
        long b)

getQuality

public SequenceQuality getQuality()

Specified by:

getQuality in interface QualityAggregator