com.milaboratory.core.tree

Class PenaltyUtils

java.lang.Object

com.milaboratory.core.tree.PenaltyUtils

public class PenaltyUtils
extends Object

Constructor Summary

Constructors

Constructor and Description
PenaltyUtils()

Method Summary

Methods

Modifier and Type	Method and Description
static byte[][]	getDifferencesCombination(double max, double[] penalty)
static byte[][]	getDifferencesCombination(double max, double[] penalty, int[] maxErrors)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PenaltyUtils

public PenaltyUtils()

Method Detail

getDifferencesCombination

public static byte[][] getDifferencesCombination(double max,
                                 double[] penalty)

Parameters:

penalty - {mismatch, deletion, insertion}

getDifferencesCombination

public static byte[][] getDifferencesCombination(double max,
                                 double[] penalty,
                                 int[] maxErrors)

Parameters:

penalty - {mismatch, deletion, insertion}