Uses of Class
com.milaboratory.core.tree.NeighborhoodIterator

Packages that use NeighborhoodIterator

Package	Description
com.milaboratory.core.clustering
com.milaboratory.core.tree

Uses of NeighborhoodIterator in com.milaboratory.core.clustering

Methods in com.milaboratory.core.clustering with parameters of type NeighborhoodIterator

Modifier and Type	Method and Description
boolean	ClusteringStrategy.canAddToCluster(Cluster<T> cluster, T minorObject, NeighborhoodIterator<S,T[]> iterator)

Uses of NeighborhoodIterator in com.milaboratory.core.tree

Methods in com.milaboratory.core.tree that return NeighborhoodIterator

Modifier and Type	Method and Description
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, double maxPenalty, double[] penalties, int[] maxErrors, MutationGuide<S> guide)
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, int mismatches, int deletions, int insertions)
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, int mismatches, int deletions, int insertions, int totalErrors)
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, int mismatches, int deletions, int insertions, int totalErrors, MutationGuide<S> guide)
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, TreeSearchParameters parameters)
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, TreeSearchParameters parameters, MutationGuide<S> guide)